Files
recon-pipeline/pipeline/tools/aquatone.yaml
epi 973893ee42 removed dependency on tool-dict.pkl (#93)
* removed tool_dict dependency

* updated tests

* updated go version

* added defaults for failing iteration during tool installation

* Update pythonapp.yml

* updated docs
2020-08-27 20:40:15 -05:00

14 lines
791 B
YAML

tools: &tools !get_default "{tools-dir}"
path: &path !join_path [*tools, aquatone]
install_commands:
- mkdir /tmp/aquatone
- wget -q https://github.com/michenriksen/aquatone/releases/download/v1.7.0/aquatone_linux_amd64_1.7.0.zip -O /tmp/aquatone/aquatone.zip
- bash -c 'if [[ ! $(which unzip) ]]; then sudo apt install -y zip; fi'
- unzip /tmp/aquatone/aquatone.zip -d /tmp/aquatone
- !join [mv /tmp/aquatone/aquatone, *path]
- rm -rf /tmp/aquatone
- bash -c 'found=false; for loc in {/usr/bin/google-chrome,/usr/bin/google-chrome-beta,/usr/bin/google-chrome-unstable,/usr/bin/chromium-browser,/usr/bin/chromium}; do if [[ $(which $loc) ]]; then found=true; break; fi ; done; if [[ $found = false ]]; then sudo apt install -y chromium-browser ; fi'
uninstall_commands:
- !join [rm, *path]