aljaz/recon-pipeline
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small changes to README

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epi
2019-09-02 15:25:09 -05:00
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README.md
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@@ -5,7 +5,7 @@
### PYTHONPATH ### PYTHONPATH
To run the pipelines, you need to set your `PYTHONPATH` environment variable to the path of this project on disk. This can be accomplished in a few ways, two solutions are offered. To run the pipelines, you need to set your `PYTHONPATH` environment variable to the path of this project on disk. This can be accomplished in a few ways, two solutions are offered.
1. Prepend PYTHONPATH=/path/to/recon-pipline to any luigi pipeline command being run. 1. Prepend `PYTHONPATH=/path/to/recon-pipline` to any luigi pipeline command being run.
2. Add `export PYTHONPATH=/path/to/recon-pipeline` to your `.bashrc` 2. Add `export PYTHONPATH=/path/to/recon-pipeline` to your `.bashrc`
### Scheduler ### Scheduler
@@ -34,7 +34,7 @@ The pipeline expects a file that describes the project scope to be in the curren
### luigi command structure ### luigi command structure
With the PYTHONPATH setup, luigi commands take on the following structure (prepend PYTHONPATH if not exported from .bashrc): With the `PYTHONPATH` setup, luigi commands take on the following structure (prepend `PYTHONPATH` if not exported from `.bashrc`):
`luigi --module PACKAGENAME.MODULENAME CLASSNAME *args` `luigi --module PACKAGENAME.MODULENAME CLASSNAME *args`
@@ -62,7 +62,7 @@ optional arguments:
--target-file TARGET_FILE --target-file TARGET_FILE
``` ```
example scope file command where `tesla` is the name of the file and it is located in the current directory. An example scope file command, where `tesla` is the name of the file and it is located in the current directory.
`PYTHONPATH=$(pwd) luigi --local-scheduler --module recon.targets TargetList --target-file tesla` `PYTHONPATH=$(pwd) luigi --local-scheduler --module recon.targets TargetList --target-file tesla`