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Fixed critical Windows compatibility issues and updated outdated documentation.
CRITICAL WINDOWS HANG FIXES:
1. ProcessPoolExecutor → ThreadPoolExecutor
- Fixes PowerShell/terminal hang where Ctrl+C wouldn't work
- Prevents .pf directory lock requiring Task Manager kill
- Root cause: Nested ProcessPool + ThreadPool on Windows creates kernel deadlock
2. Ctrl+C Interruption Support
- Replaced subprocess.run with Popen+poll pattern (industry standard)
- Poll subprocess every 100ms for interruption checking
- Added global stop_event and signal handlers for graceful shutdown
- Root cause: subprocess.run blocks threads with no signal propagation
DOCUMENTATION DRIFT FIX:
- Removed hardcoded "14 phases" references (actual is 19+ commands)
- Updated to "multiple analysis phases" throughout all docs
- Fixed CLI help text to be version-agnostic
- Added missing "Summary generation" step in HOWTOUSE.md
Changes:
- pipelines.py: ProcessPoolExecutor → ThreadPoolExecutor, added Popen+poll pattern
- Added signal handling and run_subprocess_with_interrupt() function
- commands/full.py: Updated docstring to remove specific phase count
- README.md: Changed "14 distinct phases" to "multiple analysis phases"
- HOWTOUSE.md: Updated phase references, added missing summary step
- CLAUDE.md & ARCHITECTURE.md: Removed hardcoded phase counts
Impact: Critical UX fixes - Windows compatibility restored, pipeline interruptible
Testing: Ctrl+C works, no PowerShell hangs, .pf directory deletable